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Open chromatin in human pancreatic islets (FAIRE-seq) - Appendix - Study GBCO4235


Genomics Study Specifications

Study Name Open chromatin in human pancreatic islets (FAIRE-seq) - Appendix
Contact Name Jorge Ferrer (Hospital Clinic de Barcelona)
Publication http://www.ncbi.nlm.nih.gov/pubmed/20118932
My Strategies Return to My Strategies page
Classification Tissue expression, surveys and comparisons
Links
BCBC Release Date July 29, 2011
Public Release Date July 29, 2011
Citation Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, Fogarty MP, Panhuis TM, Mieczkowski P, Secchi A, Bosco D, Berney T, Montanya E, Mohlke KL, Lieb JD, Ferrer J. A map of open chromatin in human pancreatic islets. Nat Genet. 2010. 42:255-9
Synopsis
An appendix to the published Gaulton et al. work (PMID: 20118932). In the original paper, the authors note that samples 1 and 2 are not as pure as the third sample. This appendix provides FAIRE-Seq data obtained from a purified islet sample to replace the problematic published data. The goal of the original experiment was to identify active regulatory DNA in human pancreatic islets. This was accomplished using high-throughput sequencing of genomic regions isolated using FAIRE from three purified pancreatic islet samples to identify sites of open chromatin.
No goal information provided
No approach information provided
No result information provided
No conclusion information provided
Platform types Open chromatin FAIRE-Seq, Epigenomic
Platforms Not available
Study Design Type
  • cell_type_comparison_design
Study Factors Show study factors
Study Assays Show study assays


Access to Study Data

This Study Data is publicly available to all users.


Gene List(s)

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Repositories

Ferrer Lab
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Resource History & Actions

Approved on Jul 29, 2011
Last modified on Aug 02, 2011
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