Open chromatin in human pancreatic islets (FAIRE-seq) - Appendix - Study GBCO4235
Genomics Study Specifications
| Study Name | Open chromatin in human pancreatic islets (FAIRE-seq) - Appendix | ||
|---|---|---|---|
| Contact Name | Jorge Ferrer (Hospital Clinic de Barcelona) | ||
| Publication | http://www.ncbi.nlm.nih.gov/pubmed/20118932 | ||
| My Strategies | Return to My Strategies page | ||
| Classification | Tissue expression, surveys and comparisons | ||
| Links | |||
| BCBC Release Date | July 29, 2011 | ||
| Public Release Date | July 29, 2011 | ||
| Citation | Gaulton KJ, Nammo T, Pasquali L, Simon JM, Giresi PG, Fogarty MP, Panhuis TM, Mieczkowski P, Secchi A, Bosco D, Berney T, Montanya E, Mohlke KL, Lieb JD, Ferrer J. A map of open chromatin in human pancreatic islets. Nat Genet. 2010. 42:255-9 | ||
| Synopsis |
An appendix to the published Gaulton et al. work (PMID: 20118932). In the original paper, the authors note that samples 1 and 2 are not as pure as the third sample. This appendix provides FAIRE-Seq data obtained from a purified islet sample to replace the problematic published data. The goal of the original experiment was to identify active regulatory DNA in human pancreatic islets. This was accomplished using high-throughput sequencing of genomic regions isolated using FAIRE from three purified pancreatic islet samples to identify sites of open chromatin.
No goal information provided
No approach information provided
No result information provided
No conclusion information provided
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| Platform types | Open chromatin FAIRE-Seq, Epigenomic | ||
| Platforms | Not available | ||
| Study Design Type |
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| Study Factors | Show study factors | ||
| Study Assays | Show study assays | ||
Access to Study Data
This Study Data is publicly available to all users.
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Repositories
| Ferrer Lab | |
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Stock #: Not provided Availability Notes: Not provided |
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