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Rat pancreatic gene expression after culture in increasing glucose levels - Study GBCO3650


Genomics Study Specifications

Study Name Rat pancreatic gene expression after culture in increasing glucose levels
Contact Name Jean-Christophe Jonas (University catholique de Louvain)
Publication http://www.ncbi.nlm.nih.gov/pubmed/19165461
My Strategies Return to My Strategies page
Classification Cell stimulation/injury; Islet/beta-cell stimulation/injury
Links
BCBC Release Date August 11, 2009
Public Release Date August 11, 2009
Citation Bensellam M, Van Lommel L, Overbergh L, Schuit FC, Jonas JC. Cluster analysis of rat pancreatic islet gene mRNA levels after culture in low-, intermediate- and high-glucose concentrations. Diabetologia. 2009. 52:463-76
Synopsis
Survival and function of insulin-secreting pancreatic beta-cells are markedly altered by changes in nutrient availability. In vitro, culture in 10 rather than 2mM glucose improves rodent beta-cell survival and function whereas glucose concentrations above 10mM are deleterious. The purpose of this study was to identify the mechanisms of such beta-cell plasticity; we tested the effects of a 18h culture at 2, 5, 10 and 30mM glucose on the transcriptome of rat islets precultured for 1 week at 10mM glucose (Affymetrix Rat 230.2 arrays).
Identify genes and pathways in rat pancreatic islets affected by prolonged exposure to high and low levels of glucose.
Microarrays analyses were performed on cultured rat islets using theAffymetrix GeneChip Rat Genome 230 2.0 Array. Islets were precultured in 10 mM glucose for 1 week to remove the stress effects of isolation and adaptation to culture and then exposed to 2mM, 5mM, 10 mM, and 30 mM glucose for 18 hours to see effects on beta cell function (glucose sensitivity, insulin secretion, Ca++ levels) but not yet noticeably affect cell survival.
About 5000 probe sets were up- or downregulated more than 1.4 fold between glucose conditions. Hormone transcripts were well represented while acinar and ductal cell transcripts were absent indicating that the observed effects were not due to contaminating cells. Genes most affected by glucose include those known to be strongly induced by high glucose and contribute to beta cell glucotoxicity (Aldob, Txnip, Crem, Fos). Other genes most affected are involved in integrated stress response (Dbp, Ddit3, Trib3), apoptosis (Fas), and oxidative stress (Mt1a, Hmox1). Transcription factors, Srebp1 and Srebp2, involved in fatty acid metabolism were also affected.
Eighteen distinct mRNA profiles of glucose-induced changes were identified demonstrating that glucose effects on islet gene expression are complex.
Platform types Expression microarray, Expression
Platforms Show platform Affymetrix GeneChip Rat Genome 230 2.0 Array
Study Design Type
  • compound_treatment_design
Study Factors Show study factors
Study Assays Show study assays


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Repositories

Stoeckert Lab
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Primary contributor: Stoeckert Lab
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Resource Tags

Affymetrix GeneChip Rat Genome 230 2.0 Array, Aldob, Crem, Dbp, Ddit3, Fas, Fos, Hmox1, Mt1aH, Srebf1, Srebf2, Trib3, Txnip

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Resource History & Actions

Approved on Aug 11, 2009
Last modified on Jan 17, 2012
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